From: Debabrata Midya (Debabrata.Midya_at_services_dot_nsw_dot_gov.au)
Date: Tue Apr 20 2010 - 17:58:06 PDT
Paul, Thanks for such a quick response. I am not sure what is going on here. I am looking at your message. By this time, I have done a simple test, to give you a better idea so I can solve this problem. 1. I have copied these three sites (as for example) from our e-mail message to a word document. A. http://upc.lbl.gov/docs/user/upcc.html B. http://upc.lbl.gov/docs/user/upcrun.html C. http://upc-translator.lbl.gov/upcc-2.10.0.cgi If I use CTRL + click either on A or B from my word document, it takes me to the respective sites. Whereas, if I use CTRL + click on C, I receive the following error: Unable to open: http://upc-translator.lbl.gov/upcc-2.10.0.cgi:. The Internet site reports that the item you requested could not be found. (HTTP/1.0 404). I have also tried another way: I have copied the site http://upc-translator.lbl.gov/upcc-2.10.0.cgi into the address of internet and then I clicked on Go arrow. The following error message appears: upcc.cgi: Illegal arch_size parameter: '' at /srv/www/htdocs/upcc-2.10.0.cgi line 149. Once again, thank you very much for the time you have given. Regards, Deb >>> "Paul H. Hargrove" <[email protected]> 21/04/2010 10:11 am >>> Deb, Quoting from my second email to you in this discussion thread > The source-to-source translator in "B" does not build on Cygwin. > However, the default configuration when you build "A" uses a > network-based translator service we run, eliminating the need for most > users to build "B". Since the source-to-source translator does not run on Cygwin you must use the network-based translator. From your "Connection timed out" message I would guess that you are either not connected to the network, or perhaps you have a firewall blocking the connection. -Paul Debabrata Midya wrote: > Paul, > > Thank you very much for such a quick response. > > Finally, I am able to finish up to make install. > > I have some problem to compile hello.upc. > > To compile hello.upc, I have issued the following commands: > > 1. To access hello.upc > > $ cd /cygdrive/d/upc/berkeley_upc-2.10.0/upc-examples > > 2. To compile > > $ /cygdrive/d/upc/bin/upcc -o hello hello.upc > > upcc: Error: Can't connect to > http://upc-translator.lbl.gov/upcc-2.10.0.cgi: Connection timed out > > [Note: I have downloaded only berkeley_upc-2.10.0.tar.gz in the > directory: D:\S-PLUS7\R\Parallel\Berkeley] > > Once again, thank you very much for the time you have given. > > Regards, > > Deb > > >>> "Paul H. Hargrove" <[email protected]> 20/04/2010 4:09 pm >>> > Deb, > > A: > > berkeley_upc-2.10.0 should be the directory created when you ran the > "tar" command to unpack the source archive. > What do you see if you run > cd /cygdrive/d/upc > ls > > Unless I made a mistake giving the directions, I expect you should see > "build" and "berkeley_upc-2.10.0". > If you "cd build" then "../berkeley_upc-2.10.0/configure" should refer > to the file "configure" unpacked from the archive. > > > B: > MPI_CFLAGS has an upper-case "eye" > MPI_LIBS has a lowercase "ell" > > -Paul > > Debabrata Midya wrote: > > Paul, > > > > Thank you very much for such a quick response. > > > > I need your assistance here. > > > > Part A: > > > > I have tried and it has shown an error: bash: > > ../berkeley_upc-2.10.0/configure: No such file or directory. > > > > I have tried like this: > > > > 1. $cd build > > > > bash: cd: build: No such file or directory. > > > > 2. $mkdir build > > > > 3. $cd build > > > > 4. The following in one line: > > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > MPIRUN_CMD='/cygdrive/d/MPICH2/bin/mpiexec -n %N %C' > > MPI_CC=gcc MPI_CFLAGS=-I/cygdrive/d/MPICH2/include > > MPI_LIBS='-L/cygdrive/d/MPICH2/lib -lmpi' --enable-mpi > > bash: ../berkeley_upc-2.10.0/configure: No such file or directory. > > > > Part B: > > > > The third line: > > > > MPI_CC=gcc MPI_CFLAGS=-I/cygdrive/d/MPICH2/include > > [MPI_CC=gcc MPI_CFLAGS=-I Is it upper case of letter i?] > > > > The fourth line: > > > > MPI_LIBS='-L/cygdrive/d/MPICH2/lib -lmpi' --enable-mpi > > [MPI_LIBS='-L/cygdrive/d/MPICH2/lib -l Is it upper case of letter i?] > > > > Once again, thank you very much for your time. > > > > Regards, > > > > Deb > > > > >>> "Paul H. Hargrove" <[email protected]> 20/04/2010 5:08 am >>> > > Deb, > > My answers appear below. > > -Paul > > > > Debabrata Midya wrote: > > > Paul, > > > > > > Thank you very much for such a quick response. > > > > > > 1. I was able to run up to line 4 (out of 5 commands) > > > > > > 2. ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > > MPIRUN_CMD='mpiexec -n %N %C' --enable-mpi > > > The problem is here: > > > > > > > > > checking for /usr/bin/env… /usr/bin/env > > > > > > checking for dig… no > > > > > > checking for nslookup… /cygdrive/c/WINDOWS/system32/nslookup > > > > > > checking for gmake… no > > > > > > checking for make… no > > > > > > configure: error: cannot find GNU make > > > > > > Failed during dbg configure, exit=1 > > > > > > 2A: Where can I get GNU make? After getting it, where can I install > > > it? Is it necessary to provide path in the environmental variable to > > > make use of GNU make? > > > > GNU Make is another Cygwin package to install. It should be named > > either "make" or "gmake". > > > > > > > > > > 2B: After installation of GNU make, should I need to run only the > > > fifth line, i.e., > > > > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > > MPIRUN_CMD='mpiexec -n %N %C' --enable-mpi > > > > > > > Yes, but I did some research and expect that will fail to configure MPI > > support (our defaults are not correct for MPICH2 on Cygwin). > > I think you'll need the following (all as one line): > > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > MPIRUN_CMD='/cygdrive/d/MPICH2/bin/mpiexec -n %N %C' > > MPI_CC=gcc MPI_CFLAGS=-I/cygdrive/d/MPICH2/include > > MPI_LIBS='-L/cygdrive/d/MPICH2/lib -lmpi' --enable-mpi > > > > > 3. You have mentioned in your e-mail that "If that all works, then > > > "make" and "make install" are the next to > > > commands to run". > > > > > > 3A: Will you please give me an example for it? > > > > make > > make install > > > > > > > > > > 3B: How can I run the example code hello.upc? > > > > To compile: > > upcc -o hello hello.upc > > > > To run with 4 UPC threads: > > upcrun -n 4 hello > > > > > > > > > > Once again, thank you very much for the time you have given. > > > > > > Regards, > > > > > > Deb > > > > > > >>> "Paul H. Hargrove" <[email protected]> 19/04/2010 12:29 pm >>> > > > Deb, > > > > > > Our instructions all a reader who is familiar with a Unix-type > > > environment. > > > Some hints that should help: > > > > > > + You should be using the Cygwin "bash" shell, not the DOS command > > prompt. > > > + berkeley_upc-2.10.0.tar.gz is a compressed "tar" archive containing > > > the source code - you need to unpack it > > > + The "\" at the end of the configure command is a Unix shell > thing for > > > continuing a line. So, if you entered the MPI_CC=... on the same line > > > you might have more success > > > + MPI_CC is a setting for the MPI compiler, not the mpiexec command > > > (which runs mpi apps), but the default probably works > > > + You do need a setting for MPIRUN_CMD (which will be a "template" > that > > > include mpiexec). > > > + CC and C++ default to gcc and g++ when they are available > > > + To install in D:\upc you probably need "--prefix=/cygdrive/d/upc" on > > > the configure command line > > > > > > So combining those, you probably want to enter the following five > > > commands in the Cygwin "bash" shell: > > > > > > cd /cygdrive/d/upc > > > tar xfz > > /cygdrive/d/S-PLUS7/R/Parallel/Berkeley/berkeley_upc-2.10.0.tar.gz > > > mkdir build > > > cd build > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > > MPIRUN_CMD='mpiexec -n %N %C' --enable-mpi > > > > > > If that all works, then "make" and "make install" are the next to > > > commands to run. > > > The --enable-mpi ensures that if the default MPI_CC setting doesn't > > > work, then the configure step will stop (rather than letting you > > > accidentally build Berkeley UPC without MPI support). If that > happens, > > > we can try to figure out the proper setting for MPI_CC. > > > > > > -Paul > > > > > > Debabrata Midya wrote: > > > > Paul, > > > > > > > > Thanks in advance. I need your assistance to install Berkeley UPC on > > > > windows XP. > > > > > > > > 1. I have installed cygwin in D:\cygwin directory and I have > provided > > > > the path D:\cygwin\bin in the environmental variable. > > > > I have installed the packages you have mentioned. > > > > > > > > 2. I have downloaded berkeley_upc-2.10.0.tar.gz and I have put it in > > > > D:\S-PLUS7\R\Parallel\Berkeley. > > > > > > > > 3. I have gone through the INSTALL.txt and I am trying to build > a make > > > > file. I think, I have problem here. > > > > > > > > mkdir d:\upc > > > > cd d:\upc > > > > D:\S-PLUS7\R\Parallel\Berkeley\berkeley_upc-2.10.0.tar.gz /configure > > > > CC=gcc CXX=g++ \ > > > > MPI_CC=mpiexec > > > > > > > > Error at the dos prompt: MPI_CC is not recognised as an internal or > > > > external command, operable program or batch file. > > > > Notes: 1. I have installed MPICH2 in D:\MPICH2 and I have > provided the > > > > path D:\MPICH2\bin in the environmental variable. As per test, it is > > > > working well. > > > > 2. I like to install Berkeley UPC in D:\upc directory. > > > > > > > > Once again, thank you very much for the time you have given. > > > > > > > > Regards, > > > > > > > > Deb > > > > > > > > > > > > >>> "Paul H. Hargrove" <[email protected]> 9/04/2010 3:55 pm >>> > > > > Deb, > > > > > > > > 1. Our internal notes for preparation of that huge tarball list the > > > > following as the minimum required Cygwin packages: > > > > autoconf automake bash coreutils cvs emacs flex gcc4 gdb > indent less > > > > more m4 nano ncftp openssh patch patchutils pdksh perl_manpages pine > > > > ping rsync tcsh time wget vim zsh > > > > However, that might not be perfectly up-to-date, and I suspect > some of > > > > those aren't truly necessary. However, you can always re-run the > > Cygwin > > > > installer to add more packages later if you need them. > > > > > > > > I suspect you need at least "tar" as well, to unpack the sources. > > > > > > > > 2. You need "A". > > > > The source-to-source translator in "B" does not build on Cygwin. > > > > However, the default configuration when you build "A" uses a > > > > network-based translator service we run, eliminating the need > for most > > > > users to build "B". > > > > > > > > You should be able to follow the instructions in INSTALL.txt in the > > > > source tarball to build and install the Berkeley UPC Compiler. > > > > > > > > You can find the manual pages for the "upcc" compiler command and > > > > "upcrun" job launcher at: > > > > http://upc.lbl.gov/docs/user/upcc.html > > > > and > > > > http://upc.lbl.gov/docs/user/upcrun.html > > > > > > > > The file upc-examples/hello.upc in the source tarball is a simple > > > > example UPC program. > > > > > > > > -Paul > > > > > > > > > > > > Debabrata Midya wrote: > > > > > Paul, > > > > > > > > > > Thank you very much for such a quick response. > > > > > > > > > > I need your assistance for the followings: > > > > > > > > > > 1. Installation of Cygwin: Select packages to install > > > > > > > > > > Should I select all packages or there is a list of minimum > > packages I > > > > > can select to install to work with The Berkeley UPC compiler. > > > > > > > > > > 2. Source code for Berkeley UPC (under 7MB) > > > > > > > > > > (from http://upc.lbl.gov/download/source.shtml#runtime) > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > > > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > > > > > > > > > *Berkeley UPC source downloads* > > > > > > > > > > A. The Berkeley UPC Runtime/front-end package (source > distribution): > > > > > ** > > > > > Berkeley UPC runtime (and front-end) , Version 2.10.0:* > > > > > *berkeley_upc-2.10.0.tar.gz > > > > > <http://upc.lbl.gov/download/release/berkeley_upc-2.10.0.tar.gz> > > > (5.7MB) > > > > > > > > > > B. The Berkeley UPC-to-C translator (source distribution): > > > > > > > > > > The Berkeley UPC-to-C translator, version 2.10.0:* > > > > > *berkeley_upc_translator-2.10.0.tar.gz > > > > > > > > > > > > > > > <http://upc.lbl.gov/download/release/berkeley_upc_translator-2.10.0.tar.gz> > > > > > > > > > > > > > > > ( 6.9MB) > > > > > > > > > > Should I need to download both A and B? > > > > > > > > > > 3. build from that > > > > > > > > > > How can I build after completing 1 & 2? > > > > > > > > > > May I request you to provide me couple of lines as a reference? > > > > > > > > > > Once again thank you very much for the time you have given. > > > > > > > > > > Regards, > > > > > > > > > > Deb > > > > > > > > > > >>> "Paul H. Hargrove" [email protected]> 9/04/2010 2:21 pm >> > > > > > <mailto:[email protected]%3E%209/04/2010%202:21%20pm%20%3E%3E> > > > > > Debabrata , > > > > > > > > > > The Berkeley UPC compiler is mainly written for POSIX-like > > > environments, > > > > > which does not include native Windows XP. > > > > > However, Cygwin is a POSIX-like environment for Windows that is > > > > > sufficient to allow Berkeley UPC (and many other applications > > written > > > > > for Linux or other Unix) to run. > > > > > Cygwin is a substantial infrastructure and that accounts for the > > > bulk of > > > > > the 1.2GB download. > > > > > > > > > > If you have already installed Cygwin on your machine then you > could > > > > > download just the source code for Berkeley UPC (under 7MB) and > build > > > > > from that. > > > > > > > > > > -Paul > > > > > > > > > > > > > > > Debabrata Midya wrote: > > > > > > Hi upc-users, > > > > > > > > > > > > Thanks in advance. > > > > > > > > > > > > I am Deb, Statistician at NSW Department of Services, > > Technology and > > > > > > Administration, Sydney, Australia. > > > > > > > > > > > > I am new to this group. > > > > > > > > > > > > I am currently using gcc <TDM-1 mingw32> 4.4.1 on Windows XP > > and I > > > > > > have some experience of using OpenMP. > > > > > > > > > > > > I need your assistance to start with UPC on Windows. > > > > > > > > > > > > I have found in the web site of > > > > > > http://upc.lbl.gov/download/binaries.shtml#windows that > > > *Berkeley UPC > > > > > > v2.10.0 Binary Installer* - Installs the Cygwin > > > > > > <http://www.cygwin.com/> environment, and a prebuilt version > > of the > > > > > > Berkeley UPC runtime. But the file *Tar-gzipped installer size > > > > > > is (1268MB)* > > > > > > <http://upc.lbl.gov/download/berkeley_upc-2.10.0-bin.tar.gz>. It > > > will > > > > > > take quite a while to download. Is there any alternative to > have a > > > > > > copy of it? > > > > > > > > > > > > Once again, thank you very much for the time you have given. > > > > > > > > > > > > I am looking forward for your reply. > > > > > > > > > > > > Regards, > > > > > > > > > > > > > > > > > > Debabrata Midya (Deb) > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > ************************************************************************************* > > > > > > > > > > > > This email message, including any attached files, is > > > confidential and > > > > > > intended solely for the use of the individual or entity to whom > > > it is > > > > > > addressed. > > > > > > > > > > > > The Department of Services, Technology and Administration > > > > prohibits the > > > > > > right to publish, copy, distribute or disclose any information > > > > > contained in > > > > > > this email, or its attachments, by any party other than the > > intended > > > > > > recipient. 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Hargrove [email protected] > > > > Future Technologies Group Tel: +1-510-495-2352 > > > > HPC Research Department Fax: +1-510-486-6900 > > > > Lawrence Berkeley National Laboratory > > > > > > > > > > > > > > ************************************************************************************* > > > > > > > > This email message, including any attached files, is > confidential and > > > > intended solely for the use of the individual or entity to whom > it is > > > > addressed. > > > > > > > > The Department of Services, Technology and Administration > > prohibits the > > > > right to publish, copy, distribute or disclose any information > > > contained in > > > > this email, or its attachments, by any party other than the intended > > > > recipient. 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The views or opinions presented in this email are solely > > > those of > > > > the author and do not necessarily represent those of the Department, > > > > except where the sender expressly, and with authority, states them > > > to be > > > > the views of the Department of Services, Technology and > > Administration. > > > > > > > > The Department of Services, Technology and Administration accepts no > > > > liability for any loss or damage arising from the use of this > > email and > > > > recommends that the recipient check this email and any attached > > > files for > > > > the presence of viruses. > > > > > > > > > > > > > > ************************************************************************************* > > > > > > > > > > > > > -- > > > Paul H. Hargrove [email protected] > > > Future Technologies Group Tel: +1-510-495-2352 > > > HPC Research Department Fax: +1-510-486-6900 > > > Lawrence Berkeley National Laboratory > > > > > > > > > ************************************************************************************* > > > > > > This email message, including any attached files, is confidential and > > > intended solely for the use of the individual or entity to whom it is > > > addressed. > > > > > > The Department of Services, Technology and Administration > prohibits the > > > right to publish, copy, distribute or disclose any information > > contained in > > > this email, or its attachments, by any party other than the intended > > > recipient. If you have received this email in error please notify > > the sender > > > and delete it from your system. > > > > > > No employee or agent is authorised to conclude any binding agreement > > > on behalf of the Department of Services, Technology and Administration > > > by email. The views or opinions presented in this email are solely > > those of > > > the author and do not necessarily represent those of the Department, > > > except where the sender expressly, and with authority, states them > > to be > > > the views of the Department of Services, Technology and > Administration. > > > > > > The Department of Services, Technology and Administration accepts no > > > liability for any loss or damage arising from the use of this > email and > > > recommends that the recipient check this email and any attached > > files for > > > the presence of viruses. > > > > > > > > > ************************************************************************************* > > > > > > > > > -- > > Paul H. Hargrove [email protected] > > Future Technologies Group Tel: +1-510-495-2352 > > HPC Research Department Fax: +1-510-486-6900 > > Lawrence Berkeley National Laboratory > > > > > ************************************************************************************* > > > > This email message, including any attached files, is confidential and > > intended solely for the use of the individual or entity to whom it is > > addressed. > > > > The Department of Services, Technology and Administration prohibits the > > right to publish, copy, distribute or disclose any information > contained in > > this email, or its attachments, by any party other than the intended > > recipient. If you have received this email in error please notify > the sender > > and delete it from your system. > > > > No employee or agent is authorised to conclude any binding agreement > > on behalf of the Department of Services, Technology and Administration > > by email. The views or opinions presented in this email are solely > those of > > the author and do not necessarily represent those of the Department, > > except where the sender expressly, and with authority, states them > to be > > the views of the Department of Services, Technology and Administration. > > > > The Department of Services, Technology and Administration accepts no > > liability for any loss or damage arising from the use of this email and > > recommends that the recipient check this email and any attached > files for > > the presence of viruses. > > > > > ************************************************************************************* > > > > > -- > Paul H. Hargrove [email protected] > Future Technologies Group Tel: +1-510-495-2352 > HPC Research Department Fax: +1-510-486-6900 > Lawrence Berkeley National Laboratory > > ************************************************************************************* > > This email message, including any attached files, is confidential and > intended solely for the use of the individual or entity to whom it is > addressed. > > The Department of Services, Technology and Administration prohibits the > right to publish, copy, distribute or disclose any information contained in > this email, or its attachments, by any party other than the intended > recipient. If you have received this email in error please notify the sender > and delete it from your system. > > No employee or agent is authorised to conclude any binding agreement > on behalf of the Department of Services, Technology and Administration > by email. The views or opinions presented in this email are solely those of > the author and do not necessarily represent those of the Department, > except where the sender expressly, and with authority, states them to be > the views of the Department of Services, Technology and Administration. > > The Department of Services, Technology and Administration accepts no > liability for any loss or damage arising from the use of this email and > recommends that the recipient check this email and any attached files for > the presence of viruses. > > ************************************************************************************* > -- Paul H. Hargrove [email protected] Future Technologies Group Tel: +1-510-495-2352 HPC Research Department Fax: +1-510-486-6900 Lawrence Berkeley National Laboratory ************************************************************************************* This email message, including any attached files, is confidential and intended solely for the use of the individual or entity to whom it is addressed. The Department of Services, Technology and Administration prohibits the right to publish, copy, distribute or disclose any information contained in this email, or its attachments, by any party other than the intended recipient. If you have received this email in error please notify the sender and delete it from your system. No employee or agent is authorised to conclude any binding agreement on behalf of the Department of Services, Technology and Administration by email. The views or opinions presented in this email are solely those of the author and do not necessarily represent those of the Department, except where the sender expressly, and with authority, states them to be the views of the Department of Services, Technology and Administration. The Department of Services, Technology and Administration accepts no liability for any loss or damage arising from the use of this email and recommends that the recipient check this email and any attached files for the presence of viruses. *************************************************************************************