Berkeley UPC - Unified Parallel C
(A joint project of LBNL and UC Berkeley)
June 1st, 2020: Berkeley Lab is hiring!
The Computer Languages and System Software Group (CLaSS) in the Computing
Research Division (CRD) at Lawrence Berkeley National Laboratory (LBNL) is
recruiting for a Group Lead.
See job posting for more info.
A short ssh-agent tutorial
Note: this tutorial is only relevant to UPC users if any of the following are true
- You are using ssh to launch UDP-based UPC programs
- You are using ssh to launch ibv- or ofi-based UPC programs
with upcrun, because spawning such programs
via MPI is disabled (either when your Berkeley UPC compiler was
configured, or by an environment variable setting);
- Your Berkeley UPC installation is
configured to use a remote UPC-to-C translator via ssh. (This is the case if
you are asked for a password when you try to compile a UPC program with
Here is a rather abbreviated tutorial on setting up ssh-agent, which is a
program that 'remembers' your ssh passwords for you.
Now that we've got the basics covered, here are some more ssh pointers:
- You need to generate an SSH public/private key pair on the host on which
you'll use upcc. Do this via "ssh-keygen -t rsa". You'll be asked
to enter a password. Pick a good one, and remember it. The result should
be two files, id_rsa and id_rsa.pub, both in your
- Copy the public key file to the host where the UPC-to-C translator is
located. Example: "scp ~/.ssh/id_rsa.pub somelinuxbox.lbl.gov:"
Open (or create) your $HOME/.ssh/authorized_keys2 file. Cut and
paste the contents of the id_rsa.pub file into it. Make sure there
are no line breaks--the contents of id_rsa.pub should show up at one line in
the file. Close authorized_keys2, and make sure only you can read
or write it (chmod 600 .ssh/authorized_keys). Delete the
id_rsa.pub file that you copied over (rm ~/id_rsa.pub).
- Test to see if everything is working so far: go back to the first
host, and enter "ssh somelinuxbox.lbl.gov". You should see that
ssh now asks you for the password to your key, not your general login
password. If you don't see this, make sure all the files in
your~/.ssh directories on both machines are readable/writable only
by you, and try passing the "-v" flag to ssh to see what's going on.
- Now that you can log on, you want to avoid typing your password all
the time. Setting up ssh-agent will do this. ssh-agent is a wrapper
program--you run it with the name of another command, like "ssh-agent
bash", or "ssh-agent startx". All children of the program
started by ssh-agent can share a one-time authentication you provide. Once
you start bash (or X, etc.) from ssh-agent, enter "ssh-add", and
you will be prompted for the password to your ssh key. After this, you
should be able to use your key without entering your password again.
- You can create a $HOME/.ssh/config file to contain settings for
ssh on both a global and per-host basis. For instance, you may have a
different username than your normal one on some machine. To ssh to it, you
can either use "ssh -l username hostname", or you can enter a
"User" directive in your config file. Since some utilities (like
CVS, and upcc), don't let you fiddle much with the way ssh/scp are invoked,
you'll need to set any options like this in the config file. You can also
set up aliases in the config file, which can eliminate tedious typing. For
Host falcon falcon.ccs.ornl.gov
Allows me to type "ssh falcon" and get the equivalent of
"ssh -C -2 firstname.lastname@example.org".
You must specify global options at the end of the config file, using the
"Host *" as the target. Here I've set up "ForwardX11",
which allows you to run X11 programs on the remote host securely (they are
tunneled over the secure connection), if not quickly.
"ForwardAgent" tells ssh to use transitive authentication--i.e. if
you enter your password via ssh-add on one machine, then ssh to
another that accepts that key, you should be able to then ssh to a third
machine that also accepts the key without ever entering your password again.
Some hosts turn this off, however, so don't count on it always working.
- Setting up your desktop machine to always run ssh-agent as the parent
of startx makes life easy: every shell you launch on your desktop
can share a single ssh-add. There are several ways to do this:
- Your X server may already launch an ssh-agent for the entire X
session by default. Apparently Debian does this.
- If your window manager allows you to specify an
~/.xsession file to launch programs during X startup, you can
add lines in it to launch ssh-agent at startup (and also pop up a window
to ask you your password).
See this guide
- You can set up your computer to boot into a command line instead
of a GUI login screen, and then launch X with "ssh-agent
startx". On most Unices, the difference between booting into
the GUI or not is a matter of setting the default runlevel in
/etc/inittab. On Red Hat, for instance, you can change this
simply by changing a line in /etc/inittab from
"id:5:initdefault:" instead of "id:3:initdefault:".
- Wade into your window manager startup script(s), and find a
clever place to put an ssh-agent command.
This page last modified on Tuesday, 21-Apr-2020 14:58:14 PDT