From: Paul H. Hargrove (PHHargrove_at_lbl_dot_gov)
Date: Tue Apr 20 2010 - 17:11:39 PDT
Deb, Quoting from my second email to you in this discussion thread > The source-to-source translator in "B" does not build on Cygwin. > However, the default configuration when you build "A" uses a > network-based translator service we run, eliminating the need for most > users to build "B". Since the source-to-source translator does not run on Cygwin you must use the network-based translator. From your "Connection timed out" message I would guess that you are either not connected to the network, or perhaps you have a firewall blocking the connection. -Paul Debabrata Midya wrote: > Paul, > > Thank you very much for such a quick response. > > Finally, I am able to finish up to make install. > > I have some problem to compile hello.upc. > > To compile hello.upc, I have issued the following commands: > > 1. To access hello.upc > > $ cd /cygdrive/d/upc/berkeley_upc-2.10.0/upc-examples > > 2. To compile > > $ /cygdrive/d/upc/bin/upcc -o hello hello.upc > > upcc: Error: Can't connect to > http://upc-translator.lbl.gov/upcc-2.10.0.cgi: Connection timed out > > [Note: I have downloaded only berkeley_upc-2.10.0.tar.gz in the > directory: D:\S-PLUS7\R\Parallel\Berkeley] > > Once again, thank you very much for the time you have given. > > Regards, > > Deb > > >>> "Paul H. Hargrove" <PHHargrove_at_lbl_dot_gov> 20/04/2010 4:09 pm >>> > Deb, > > A: > > berkeley_upc-2.10.0 should be the directory created when you ran the > "tar" command to unpack the source archive. > What do you see if you run > cd /cygdrive/d/upc > ls > > Unless I made a mistake giving the directions, I expect you should see > "build" and "berkeley_upc-2.10.0". > If you "cd build" then "../berkeley_upc-2.10.0/configure" should refer > to the file "configure" unpacked from the archive. > > > B: > MPI_CFLAGS has an upper-case "eye" > MPI_LIBS has a lowercase "ell" > > -Paul > > Debabrata Midya wrote: > > Paul, > > > > Thank you very much for such a quick response. > > > > I need your assistance here. > > > > Part A: > > > > I have tried and it has shown an error: bash: > > ../berkeley_upc-2.10.0/configure: No such file or directory. > > > > I have tried like this: > > > > 1. $cd build > > > > bash: cd: build: No such file or directory. > > > > 2. $mkdir build > > > > 3. $cd build > > > > 4. The following in one line: > > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > MPIRUN_CMD='/cygdrive/d/MPICH2/bin/mpiexec -n %N %C' > > MPI_CC=gcc MPI_CFLAGS=-I/cygdrive/d/MPICH2/include > > MPI_LIBS='-L/cygdrive/d/MPICH2/lib -lmpi' --enable-mpi > > bash: ../berkeley_upc-2.10.0/configure: No such file or directory. > > > > Part B: > > > > The third line: > > > > MPI_CC=gcc MPI_CFLAGS=-I/cygdrive/d/MPICH2/include > > [MPI_CC=gcc MPI_CFLAGS=-I Is it upper case of letter i?] > > > > The fourth line: > > > > MPI_LIBS='-L/cygdrive/d/MPICH2/lib -lmpi' --enable-mpi > > [MPI_LIBS='-L/cygdrive/d/MPICH2/lib -l Is it upper case of letter i?] > > > > Once again, thank you very much for your time. > > > > Regards, > > > > Deb > > > > >>> "Paul H. Hargrove" <PHHargrove_at_lbl_dot_gov> 20/04/2010 5:08 am >>> > > Deb, > > My answers appear below. > > -Paul > > > > Debabrata Midya wrote: > > > Paul, > > > > > > Thank you very much for such a quick response. > > > > > > 1. I was able to run up to line 4 (out of 5 commands) > > > > > > 2. ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > > MPIRUN_CMD='mpiexec -n %N %C' --enable-mpi > > > The problem is here: > > > > > > > > > checking for /usr/bin/env… /usr/bin/env > > > > > > checking for dig… no > > > > > > checking for nslookup… /cygdrive/c/WINDOWS/system32/nslookup > > > > > > checking for gmake… no > > > > > > checking for make… no > > > > > > configure: error: cannot find GNU make > > > > > > Failed during dbg configure, exit=1 > > > > > > 2A: Where can I get GNU make? After getting it, where can I install > > > it? Is it necessary to provide path in the environmental variable to > > > make use of GNU make? > > > > GNU Make is another Cygwin package to install. It should be named > > either "make" or "gmake". > > > > > > > > > > 2B: After installation of GNU make, should I need to run only the > > > fifth line, i.e., > > > > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > > MPIRUN_CMD='mpiexec -n %N %C' --enable-mpi > > > > > > > Yes, but I did some research and expect that will fail to configure MPI > > support (our defaults are not correct for MPICH2 on Cygwin). > > I think you'll need the following (all as one line): > > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > MPIRUN_CMD='/cygdrive/d/MPICH2/bin/mpiexec -n %N %C' > > MPI_CC=gcc MPI_CFLAGS=-I/cygdrive/d/MPICH2/include > > MPI_LIBS='-L/cygdrive/d/MPICH2/lib -lmpi' --enable-mpi > > > > > 3. You have mentioned in your e-mail that "If that all works, then > > > "make" and "make install" are the next to > > > commands to run". > > > > > > 3A: Will you please give me an example for it? > > > > make > > make install > > > > > > > > > > 3B: How can I run the example code hello.upc? > > > > To compile: > > upcc -o hello hello.upc > > > > To run with 4 UPC threads: > > upcrun -n 4 hello > > > > > > > > > > Once again, thank you very much for the time you have given. > > > > > > Regards, > > > > > > Deb > > > > > > >>> "Paul H. Hargrove" <PHHargrove_at_lbl_dot_gov> 19/04/2010 12:29 pm >>> > > > Deb, > > > > > > Our instructions all a reader who is familiar with a Unix-type > > > environment. > > > Some hints that should help: > > > > > > + You should be using the Cygwin "bash" shell, not the DOS command > > prompt. > > > + berkeley_upc-2.10.0.tar.gz is a compressed "tar" archive containing > > > the source code - you need to unpack it > > > + The "\" at the end of the configure command is a Unix shell > thing for > > > continuing a line. So, if you entered the MPI_CC=... on the same line > > > you might have more success > > > + MPI_CC is a setting for the MPI compiler, not the mpiexec command > > > (which runs mpi apps), but the default probably works > > > + You do need a setting for MPIRUN_CMD (which will be a "template" > that > > > include mpiexec). > > > + CC and C++ default to gcc and g++ when they are available > > > + To install in D:\upc you probably need "--prefix=/cygdrive/d/upc" on > > > the configure command line > > > > > > So combining those, you probably want to enter the following five > > > commands in the Cygwin "bash" shell: > > > > > > cd /cygdrive/d/upc > > > tar xfz > > /cygdrive/d/S-PLUS7/R/Parallel/Berkeley/berkeley_upc-2.10.0.tar.gz > > > mkdir build > > > cd build > > > ../berkeley_upc-2.10.0/configure --prefix=/cygdrive/d/upc > > > MPIRUN_CMD='mpiexec -n %N %C' --enable-mpi > > > > > > If that all works, then "make" and "make install" are the next to > > > commands to run. > > > The --enable-mpi ensures that if the default MPI_CC setting doesn't > > > work, then the configure step will stop (rather than letting you > > > accidentally build Berkeley UPC without MPI support). If that > happens, > > > we can try to figure out the proper setting for MPI_CC. > > > > > > -Paul > > > > > > Debabrata Midya wrote: > > > > Paul, > > > > > > > > Thanks in advance. I need your assistance to install Berkeley UPC on > > > > windows XP. > > > > > > > > 1. I have installed cygwin in D:\cygwin directory and I have > provided > > > > the path D:\cygwin\bin in the environmental variable. > > > > I have installed the packages you have mentioned. > > > > > > > > 2. I have downloaded berkeley_upc-2.10.0.tar.gz and I have put it in > > > > D:\S-PLUS7\R\Parallel\Berkeley. > > > > > > > > 3. I have gone through the INSTALL.txt and I am trying to build > a make > > > > file. I think, I have problem here. > > > > > > > > mkdir d:\upc > > > > cd d:\upc > > > > D:\S-PLUS7\R\Parallel\Berkeley\berkeley_upc-2.10.0.tar.gz /configure > > > > CC=gcc CXX=g++ \ > > > > MPI_CC=mpiexec > > > > > > > > Error at the dos prompt: MPI_CC is not recognised as an internal or > > > > external command, operable program or batch file. > > > > Notes: 1. I have installed MPICH2 in D:\MPICH2 and I have > provided the > > > > path D:\MPICH2\bin in the environmental variable. As per test, it is > > > > working well. > > > > 2. I like to install Berkeley UPC in D:\upc directory. > > > > > > > > Once again, thank you very much for the time you have given. > > > > > > > > Regards, > > > > > > > > Deb > > > > > > > > > > > > >>> "Paul H. Hargrove" <PHHargrove_at_lbl_dot_gov> 9/04/2010 3:55 pm >>> > > > > Deb, > > > > > > > > 1. Our internal notes for preparation of that huge tarball list the > > > > following as the minimum required Cygwin packages: > > > > autoconf automake bash coreutils cvs emacs flex gcc4 gdb > indent less > > > > more m4 nano ncftp openssh patch patchutils pdksh perl_manpages pine > > > > ping rsync tcsh time wget vim zsh > > > > However, that might not be perfectly up-to-date, and I suspect > some of > > > > those aren't truly necessary. However, you can always re-run the > > Cygwin > > > > installer to add more packages later if you need them. > > > > > > > > I suspect you need at least "tar" as well, to unpack the sources. > > > > > > > > 2. You need "A". > > > > The source-to-source translator in "B" does not build on Cygwin. > > > > However, the default configuration when you build "A" uses a > > > > network-based translator service we run, eliminating the need > for most > > > > users to build "B". > > > > > > > > You should be able to follow the instructions in INSTALL.txt in the > > > > source tarball to build and install the Berkeley UPC Compiler. > > > > > > > > You can find the manual pages for the "upcc" compiler command and > > > > "upcrun" job launcher at: > > > > http://upc.lbl.gov/docs/user/upcc.html > > > > and > > > > http://upc.lbl.gov/docs/user/upcrun.html > > > > > > > > The file upc-examples/hello.upc in the source tarball is a simple > > > > example UPC program. > > > > > > > > -Paul > > > > > > > > > > > > Debabrata Midya wrote: > > > > > Paul, > > > > > > > > > > Thank you very much for such a quick response. > > > > > > > > > > I need your assistance for the followings: > > > > > > > > > > 1. Installation of Cygwin: Select packages to install > > > > > > > > > > Should I select all packages or there is a list of minimum > > packages I > > > > > can select to install to work with The Berkeley UPC compiler. > > > > > > > > > > 2. Source code for Berkeley UPC (under 7MB) > > > > > > > > > > (from http://upc.lbl.gov/download/source.shtml#runtime) > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > > > <http://upc.lbl.gov/download/source.shtml#runtime%29> > > > > > > > > > > *Berkeley UPC source downloads* > > > > > > > > > > A. The Berkeley UPC Runtime/front-end package (source > distribution): > > > > > ** > > > > > Berkeley UPC runtime (and front-end) , Version 2.10.0:* > > > > > *berkeley_upc-2.10.0.tar.gz > > > > > <http://upc.lbl.gov/download/release/berkeley_upc-2.10.0.tar.gz> > > > (5.7MB) > > > > > > > > > > B. The Berkeley UPC-to-C translator (source distribution): > > > > > > > > > > The Berkeley UPC-to-C translator, version 2.10.0:* > > > > > *berkeley_upc_translator-2.10.0.tar.gz > > > > > > > > > > > > > > > <http://upc.lbl.gov/download/release/berkeley_upc_translator-2.10.0.tar.gz> > > > > > > > > > > > > > > > ( 6.9MB) > > > > > > > > > > Should I need to download both A and B? > > > > > > > > > > 3. build from that > > > > > > > > > > How can I build after completing 1 & 2? > > > > > > > > > > May I request you to provide me couple of lines as a reference? > > > > > > > > > > Once again thank you very much for the time you have given. > > > > > > > > > > Regards, > > > > > > > > > > Deb > > > > > > > > > > >>> "Paul H. Hargrove" PHHargrove_at_lbl_dot_gov> 9/04/2010 2:21 pm >> > > > > > <mailto:PHHargrove_at_lbl_dot_gov%3E%209/04/2010%202:21%20pm%20%3E%3E> > > > > > Debabrata , > > > > > > > > > > The Berkeley UPC compiler is mainly written for POSIX-like > > > environments, > > > > > which does not include native Windows XP. > > > > > However, Cygwin is a POSIX-like environment for Windows that is > > > > > sufficient to allow Berkeley UPC (and many other applications > > written > > > > > for Linux or other Unix) to run. > > > > > Cygwin is a substantial infrastructure and that accounts for the > > > bulk of > > > > > the 1.2GB download. > > > > > > > > > > If you have already installed Cygwin on your machine then you > could > > > > > download just the source code for Berkeley UPC (under 7MB) and > build > > > > > from that. > > > > > > > > > > -Paul > > > > > > > > > > > > > > > Debabrata Midya wrote: > > > > > > Hi upc-users, > > > > > > > > > > > > Thanks in advance. > > > > > > > > > > > > I am Deb, Statistician at NSW Department of Services, > > Technology and > > > > > > Administration, Sydney, Australia. > > > > > > > > > > > > I am new to this group. > > > > > > > > > > > > I am currently using gcc <TDM-1 mingw32> 4.4.1 on Windows XP > > and I > > > > > > have some experience of using OpenMP. > > > > > > > > > > > > I need your assistance to start with UPC on Windows. > > > > > > > > > > > > I have found in the web site of > > > > > > http://upc.lbl.gov/download/binaries.shtml#windows that > > > *Berkeley UPC > > > > > > v2.10.0 Binary Installer* - Installs the Cygwin > > > > > > <http://www.cygwin.com/> environment, and a prebuilt version > > of the > > > > > > Berkeley UPC runtime. But the file *Tar-gzipped installer size > > > > > > is (1268MB)* > > > > > > <http://upc.lbl.gov/download/berkeley_upc-2.10.0-bin.tar.gz>. It > > > will > > > > > > take quite a while to download. Is there any alternative to > have a > > > > > > copy of it? > > > > > > > > > > > > Once again, thank you very much for the time you have given. > > > > > > > > > > > > I am looking forward for your reply. > > > > > > > > > > > > Regards, > > > > > > > > > > > > > > > > > > Debabrata Midya (Deb) > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > ************************************************************************************* > > > > > > > > > > > > This email message, including any attached files, is > > > confidential and > > > > > > intended solely for the use of the individual or entity to whom > > > it is > > > > > > addressed. > > > > > > > > > > > > The Department of Services, Technology and Administration > > > > prohibits the > > > > > > right to publish, copy, distribute or disclose any information > > > > > contained in > > > > > > this email, or its attachments, by any party other than the > > intended > > > > > > recipient. 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Hargrove PHHargrove_at_lbl_dot_gov > > > > Future Technologies Group Tel: +1-510-495-2352 > > > > HPC Research Department Fax: +1-510-486-6900 > > > > Lawrence Berkeley National Laboratory > > > > > > > > > > > > > > ************************************************************************************* > > > > > > > > This email message, including any attached files, is > confidential and > > > > intended solely for the use of the individual or entity to whom > it is > > > > addressed. > > > > > > > > The Department of Services, Technology and Administration > > prohibits the > > > > right to publish, copy, distribute or disclose any information > > > contained in > > > > this email, or its attachments, by any party other than the intended > > > > recipient. 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The views or opinions presented in this email are solely > > > those of > > > > the author and do not necessarily represent those of the Department, > > > > except where the sender expressly, and with authority, states them > > > to be > > > > the views of the Department of Services, Technology and > > Administration. > > > > > > > > The Department of Services, Technology and Administration accepts no > > > > liability for any loss or damage arising from the use of this > > email and > > > > recommends that the recipient check this email and any attached > > > files for > > > > the presence of viruses. > > > > > > > > > > > > > > ************************************************************************************* > > > > > > > > > > > > > -- > > > Paul H. Hargrove PHHargrove_at_lbl_dot_gov > > > Future Technologies Group Tel: +1-510-495-2352 > > > HPC Research Department Fax: +1-510-486-6900 > > > Lawrence Berkeley National Laboratory > > > > > > > > > ************************************************************************************* > > > > > > This email message, including any attached files, is confidential and > > > intended solely for the use of the individual or entity to whom it is > > > addressed. > > > > > > The Department of Services, Technology and Administration > prohibits the > > > right to publish, copy, distribute or disclose any information > > contained in > > > this email, or its attachments, by any party other than the intended > > > recipient. If you have received this email in error please notify > > the sender > > > and delete it from your system. > > > > > > No employee or agent is authorised to conclude any binding agreement > > > on behalf of the Department of Services, Technology and Administration > > > by email. The views or opinions presented in this email are solely > > those of > > > the author and do not necessarily represent those of the Department, > > > except where the sender expressly, and with authority, states them > > to be > > > the views of the Department of Services, Technology and > Administration. > > > > > > The Department of Services, Technology and Administration accepts no > > > liability for any loss or damage arising from the use of this > email and > > > recommends that the recipient check this email and any attached > > files for > > > the presence of viruses. > > > > > > > > > ************************************************************************************* > > > > > > > > > -- > > Paul H. Hargrove PHHargrove_at_lbl_dot_gov > > Future Technologies Group Tel: +1-510-495-2352 > > HPC Research Department Fax: +1-510-486-6900 > > Lawrence Berkeley National Laboratory > > > > > ************************************************************************************* > > > > This email message, including any attached files, is confidential and > > intended solely for the use of the individual or entity to whom it is > > addressed. > > > > The Department of Services, Technology and Administration prohibits the > > right to publish, copy, distribute or disclose any information > contained in > > this email, or its attachments, by any party other than the intended > > recipient. If you have received this email in error please notify > the sender > > and delete it from your system. > > > > No employee or agent is authorised to conclude any binding agreement > > on behalf of the Department of Services, Technology and Administration > > by email. The views or opinions presented in this email are solely > those of > > the author and do not necessarily represent those of the Department, > > except where the sender expressly, and with authority, states them > to be > > the views of the Department of Services, Technology and Administration. > > > > The Department of Services, Technology and Administration accepts no > > liability for any loss or damage arising from the use of this email and > > recommends that the recipient check this email and any attached > files for > > the presence of viruses. > > > > > ************************************************************************************* > > > > > -- > Paul H. Hargrove PHHargrove_at_lbl_dot_gov > Future Technologies Group Tel: +1-510-495-2352 > HPC Research Department Fax: +1-510-486-6900 > Lawrence Berkeley National Laboratory > > ************************************************************************************* > > This email message, including any attached files, is confidential and > intended solely for the use of the individual or entity to whom it is > addressed. > > The Department of Services, Technology and Administration prohibits the > right to publish, copy, distribute or disclose any information contained in > this email, or its attachments, by any party other than the intended > recipient. If you have received this email in error please notify the sender > and delete it from your system. > > No employee or agent is authorised to conclude any binding agreement > on behalf of the Department of Services, Technology and Administration > by email. The views or opinions presented in this email are solely those of > the author and do not necessarily represent those of the Department, > except where the sender expressly, and with authority, states them to be > the views of the Department of Services, Technology and Administration. > > The Department of Services, Technology and Administration accepts no > liability for any loss or damage arising from the use of this email and > recommends that the recipient check this email and any attached files for > the presence of viruses. > > ************************************************************************************* > -- Paul H. Hargrove PHHargrove_at_lbl_dot_gov Future Technologies Group Tel: +1-510-495-2352 HPC Research Department Fax: +1-510-486-6900 Lawrence Berkeley National Laboratory